Molecular File formats:
BA - BioAdviser document - a native BioAdviser file format. Binary, proprietary format.
PDB, ENT - Brookhaven Protein Data Bank file format (read/write).
MOL - MDL molecular file format (read/write).
HIN - HyperChem data file (read only). HyperChem is trademark of HyperCube, Inc.
XYZ - A simple Cartesian molecular file format (read/write).
ARC - MOPAC ARC (archive) file (read only).
WRL - VRML files (write only).
PAR - BioAdviser repository files. Facilitates the modification of program repository definitions.
BioAdviser view types:
Fast 3D structure (simplified molecular rendering mode targeting very large molecules).
3D structure (basic, very rich 3D molecular rendering mode).
AminoAcid sequences (schematic view of aminoacid chains).
Properties (protein properties plots: Hydropathic index, Hydrophobicity, Karpuls & Schulz, Emini, Hopp & Woods, Kyte & Doolittle Robson & Garnier , Dipole).
PDB Edit (this view facilitates manual editing in the PDB format).
Styles for 3D structure view type:
For atoms and bonds:
Ball & Stick.
Ribbon Wires for C atoms.
Secondary Structure Motifs.
Color schemes for atoms and bonds:
Default color scheme (Scheme1) - characterized by black carbon atoms.
Alternate color scheme (Scheme 2) - characterized by white carbon atoms.
Molecular Editor features:
Copy & Paste entire molecular system or selected part.
Automatic Hydrogen atoms creation.
Move molecules, Rotate Side Chain, Change T-Angle, Mutate.
Build Protein (from Amino Acids building blocks).
Change Atom type.
Clipping planes, clipping spheres.
Multiple selection levels: Atoms, Residues, Molecules, Labels.
Select All, Invert Selection operations.
Narrowing the scope of most operations to selected objects.