Cell Illustrator - Key Functionality
Easy run from web browser on all universal platforms, e.g. Windows, Linux, Mac
Intuitive User Interface
SVG Library of biological elements
Properties of all model elements are tabulated and are easy to modify
Asocciate with external Databases
Integrated visualization mode for the analysis of Gene Relationship Networks
Import of SBML and CellML models and and BioPAX/CSO ontologies.
Whole pathways or single reactions can be imported from Transapth database
Variables' actual values can be displayed during simulation
Five simulation modes: three different continuous simulation modes, step simulation and step simulation with animation
Discrete processes have unique animated simulation option to observe quantities flow through the system
Simulation results can be presented on real-time graphs or exported to common format files
A simulation run can be saved in a log file and replayed in Cell Illustrator Player
The Simulation History dialog provides access to previous versions of a model and simulation results (Simulation History dialog window).
Final simulation results can be presented using Cell Animator with graphs and animations. Sample verified biochemical models created using Cell Illustrator are available
Parameterized Simulation allows to run a batch of similar simulation by varying one or more parameter. The simulation result can be compared on 3D charts.
Export the simulation model to source code. This source code can be customized, compiled and executed in an external application